Here's my analysis of my area:
Target hasn't gotten anything accept the exclusive packs and one or two restocks of deluxe figures in two months. They are selling down the basic figures and only have a few left- mostly Beloq and Cairo Swordsman.
Walmart has a TON of figures that don't look like they have been touched in months. The figures even seem to be in the same order every time I go. They aren't getting anything new and the one LC Indy and young Indy have remained in the same position on the pegs for well over a month.
Toys R us (believe it or not) seems to get new stock in pretty regularly. Unfortunately, all that's left once the stock people get through and the store opens are the repacks from previous lines that are paired up with the Temple of Doom figures. So I don't think there's much chance of a frequent shopper like me to pick TOD figures up there. Especially with the high prices these figures are fetching on ebay.
I've been checking alternate outlets for these figures. Supermarkets, drug stores, and discount stores. I think that these are the kinds of stores that are going to have them in abundance as the holidays approach. The big guys don't want to clog up valuable peg space at holiday time with a lame duck line. Just my opinion.